Hierarchical pathway listing for Manihot esculenta

Table of Contents

Overview

This page presents the evidence used to determine which pathways are present in Manihot esculenta. For each pathway, we show

Key to Pathway Evidence Glyph Edge Colors

Pathway Summary

Base pathways 173
Total reactions in the base pathways 672
Base pathway reactions that are pathway holes 269 (40%)
Base pathway reactions that are not pathway holes 403 (60%)

Activation/Inactivation/Interconversion:Activation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
long-chain fatty acid activation
0.283 1 1 0 (none) 0 of 0 yes
sulfate activation for sulfonation
0.566 2 2 0 (none) 0 of 0 yes

Activation/Inactivation/Interconversion:Interconversions

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
methyl indole-3-acetate interconversion
0.88 2 2 0 (none) 0 of 0 yes
zeaxanthin, antheraxanthin and violaxanthin interconversion
0.186 4 2 0 (none) 0 of 0 yes

Biosynthesis:Amino Acids Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
glycine biosynthesis I
0.233 1 1 0 (none) 0 of 0 yes
glycine biosynthesis III
0.88 1 1 0 (none) 0 of 0 yes
hypusine biosynthesis
0.339 5 4 0 (none) 0 of 0 yes
L-alanine biosynthesis II
0.263 1 1 0 (none) 0 of 0 yes
L-arginine biosynthesis II (acetyl cycle)
0.222 9 5 0 (none) 2 of 2 yes
L-asparagine biosynthesis I
0.88 1 1 0 (none) 0 of 0 yes
L-asparagine biosynthesis II
0.423 1 1 0 (none) 0 of 0 yes
L-aspartate biosynthesis
0.239 1 1 0 (none) 0 of 0 yes
L-cysteine biosynthesis I
0.44 2 1 0 (none) 0 of 0 yes
L-glutamate biosynthesis IV
0.88 1 1 1 ammonia assimilation cycle I 0 of 0 yes
L-glutamine biosynthesis I
0.251 1 1 1 ammonia assimilation cycle I 0 of 0 yes
L-histidine biosynthesis
0.349 10 5 0 (none) 0 of 0 yes
L-leucine biosynthesis
0.41 6 4 0 (none) 0 of 0 yes
L-methionine biosynthesis II
0.171 6 3 0 (none) 1 of 2 yes
L-nicotianamine biosynthesis
0.423 1 1 0 (none) 0 of 0 yes
L-phenylalanine biosynthesis II
0.375 3 2 0 (none) 1 of 1 yes
L-serine biosynthesis
0.88 3 3 0 (none) 0 of 0 yes
L-threonine biosynthesis
0.212 2 1 0 (none) 0 of 0 yes
L-tryptophan biosynthesis
0.418 6 4 0 (none) 0 of 0 yes
L-valine biosynthesis
0.291 4 2 0 (none) 0 of 0 yes
S-methyl-L-methionine cycle
0.322 2 2 0 (none) 0 of 0 yes
seleno-amino acid biosynthesis
0.352 5 2 0 (none) 0 of 0 yes
uracil degradation I (reductive)
0.293 3 1 0 (none) 0 of 0 yes

Biosynthesis:Aminoacyl-tRNA Charging

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
glutaminyl-tRNAgln biosynthesis via transamidation
0.44 2 1 0 (none) 0 of 0 yes
tRNA charging
0.481 21 12 0 (none) 0 of 0 yes

Biosynthesis:Aromatic Compounds Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
3-dehydroquinate biosynthesis I
0.88 2 2 0 (none) 0 of 0 yes
4-hydroxybenzoate biosynthesis V
0.224 5 2 0 (none) 0 of 0 yes
4-hydroxyphenylpyruvate biosynthesis
0.236 1 1 0 (none) 0 of 0 yes
chorismate biosynthesis from 3-dehydroquinate
0.293 6 2 0 (none) 0 of 0 yes
o-diquinones biosynthesis
0.88 1 1 0 (none) 0 of 0 yes
oligomeric urushiol biosynthesis
0.88 2 2 0 (none) 0 of 0 yes

Biosynthesis:Carbohydrates Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
1,3-beta-D-glucan biosynthesis
0.88 1 1 0 (none) 0 of 0 yes
acetaldehyde biosynthesis I
0.233 1 1 0 (none) 0 of 0 yes
ajugose biosynthesis II (galactinol-independent)
0.293 3 1 0 (none) 0 of 0 yes
fructan biosynthesis
0.352 5 2 0 (none) 0 of 0 yes
GDP-L-fucose biosynthesis II (from L-fucose)
0.88 2 2 0 (none) 0 of 0 yes
stachyose biosynthesis
0.508 3 3 0 (none) 0 of 0 yes
starch degradation II
0.489 9 5 0 (none) 0 of 0 yes
sucrose biosynthesis II
0.446 8 8 3 sucrose biosynthesis I (from photosynthesis) 0 of 0 yes
UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)
0.587 3 2 0 (none) 1 of 1 yes
UDP-alpha-D-glucuronate biosynthesis (from UDP-glucose)
0.88 1 1 0 (none) 0 of 0 yes
UDP-D-apiose biosynthesis (from UDP-D-glucuronate)
0.88 1 1 0 (none) 0 of 0 yes
UDP-D-galactose biosynthesis
0.251 1 1 0 (none) 0 of 0 yes
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate)
0.88 1 1 0 (none) 0 of 0 yes
UDP-glucose biosynthesis
0.255 2 2 0 (none) 0 of 0 yes
UDP-L-arabinose biosynthesis II (from L-arabinose)
0.44 2 1 0 (none) 0 of 0 yes

Biosynthesis:Cell Structures Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
Kdo transfer to lipid IVA I
0.652 2 2 0 (none) 0 of 0 yes
sporopollenin precursors biosynthesis
0.265 18 4 0 (none) 0 of 0 yes
suberin monomers biosynthesis
0.167 19 6 0 (none) 0 of 0 yes
UDP-alpha-D-glucuronate biosynthesis (from UDP-glucose)
0.88 1 1 0 (none) 0 of 0 yes

Biosynthesis:Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
chlorophyllide a biosynthesis I (aerobic, light-dependent)
0.179 10 4 0 (none) 1 of 2 yes
farnesylcysteine salvage pathway
0.44 4 1 0 (none) 0 of 0 yes
folate polyglutamylation
0.627 5 5 0 (none) 0 of 0 yes
geranyl diphosphate biosynthesis
0.236 1 1 1 (3R)-linalool biosynthesis 0 of 0 yes
geranylgeranyl diphosphate biosynthesis
0.239 1 1 0 (none) 0 of 0 yes
glutamate removal from folates
0.88 1 1 0 (none) 0 of 0 yes
glutathione biosynthesis
0.601 2 2 0 (none) 0 of 0 yes
glutathione-glutaredoxin redox reactions
0.423 2 1 0 (none) 0 of 0 yes
glutathione-peroxide redox reactions
0.728 3 3 1 reactive oxygen species degradation 0 of 0 yes
heme biosynthesis I (aerobic)
0.171 4 2 0 (none) 0 of 0 yes
lipoate biosynthesis and incorporation I
0.601 2 2 0 (none) 0 of 0 yes
phytochromobilin biosynthesis
0.377 3 2 0 (none) 1 of 1 yes
S-adenosyl-L-methionine biosynthesis
0.263 1 1 0 (none) 0 of 0 yes
siroheme biosynthesis
0.22 4 1 0 (none) 0 of 0 yes
tetrahydrofolate biosynthesis
0.293 3 1 0 (none) 0 of 0 yes
tetrapyrrole biosynthesis I (from glutamate)
0.505 6 5 0 (none) 0 of 0 yes
thio-molybdenum cofactor biosynthesis
0.88 1 1 0 (none) 0 of 0 yes
trans, trans-farnesyl diphosphate biosynthesis
0.253 3 3 1 (3R)-linalool biosynthesis 1 of 1 yes
vitamin E biosynthesis (tocopherols)
0.377 7 3 0 (none) 0 of 0 yes
vitamin E biosynthesis (tocotrienols)
0.293 6 2 0 (none) 0 of 0 yes

Biosynthesis:Hormones Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
abscisic acid biosynthesis
0.352 5 2 0 (none) 0 of 0 yes
cis-zeatin biosynthesis
0.176 5 1 0 (none) 0 of 0 yes
ethylene biosynthesis I (plants)
0.674 3 3 0 (none) 0 of 0 yes
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)
0.251 7 2 0 (none) 0 of 0 yes
jasmonic acid biosynthesis
0.485 19 11 0 (none) 0 of 0 yes
methyl indole-3-acetate interconversion
0.88 2 2 0 (none) 0 of 0 yes

Biosynthesis:Fatty Acid and Lipid Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
acyl-CoA hydrolysis
0.88 1 1 0 (none) 0 of 0 yes
biotin-carboxyl carrier protein assembly
0.587 4 2 0 (none) 0 of 0 yes
CDP-diacylglycerol biosynthesis II
0.3 4 2 0 (none) 0 of 0 yes
choline biosynthesis III
0.215 3 2 0 (none) 0 of 0 yes
diacylglycerol and triacylglycerol biosynthesis
0.247 7 3 0 (none) 0 of 0 yes
epoxysqualene biosynthesis
0.212 2 1 0 (none) 0 of 0 yes
fatty acid biosynthesis initiation I
0.375 3 2 0 (none) 1 of 1 yes
fatty acid elongation -- saturated
0.352 5 2 0 (none) 0 of 0 yes
galactolipid biosynthesis I
0.176 5 1 0 (none) 0 of 0 yes
Kdo transfer to lipid IVA I
0.652 2 2 0 (none) 0 of 0 yes
long-chain fatty acid activation
0.283 1 1 0 (none) 0 of 0 yes
palmitate biosynthesis II (bacteria and plants)
0.29 31 15 0 (none) 0 of 0 yes
phosphatidylcholine biosynthesis I
0.401 3 2 0 (none) 0 of 0 yes
phosphatidylethanolamine biosynthesis I
0.88 2 2 0 (none) 0 of 0 yes
phosphatidylinositol biosynthesis II (eukaryotes)
0.322 1 1 0 (none) 0 of 0 yes
sphingomyelin metabolism
0.293 3 1 0 (none) 0 of 0 yes
stearate biosynthesis II (bacteria and plants)
0.364 6 3 0 (none) 0 of 0 yes
sterculate biosynthesis
0.44 2 1 0 (none) 0 of 0 yes
sterol:steryl ester interconversion (yeast)
0.44 4 2 0 (none) 0 of 0 yes

Biosynthesis:Metabolic Regulators Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
fructose 2,6-bisphosphate biosynthesis
0.88 2 2 0 (none) 0 of 0 yes

Biosynthesis:Nucleosides and Nucleotides Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
adenine and adenosine salvage VI
0.88 1 1 0 (none) 0 of 0 yes
adenosine deoxyribonucleotides de novo biosynthesis
0.161 2 1 0 (none) 0 of 0 yes
adenosine ribonucleotides de novo biosynthesis
0.66 4 3 0 (none) 0 of 0 yes
CMP phosphorylation
0.44 2 1 0 (none) 0 of 0 yes
guanine and guanosine salvage II
0.212 2 1 0 (none) 0 of 0 yes
guanosine deoxyribonucleotides de novo biosynthesis I
0.161 2 1 0 (none) 0 of 0 yes
inosine-5'-phosphate biosynthesis II
0.176 5 1 0 (none) 1 of 1 yes
pyrimidine deoxyribonucleosides salvage
0.485 5 4 0 (none) 0 of 0 yes
pyrimidine deoxyribonucleotides de novo biosynthesis I
0.16 9 5 0 (none) 1 of 1 yes
pyrimidine nucleobases salvage I
0.88 1 1 0 (none) 0 of 0 yes
pyrimidine ribonucleosides salvage I
0.694 3 3 0 (none) 1 of 1 yes
pyrimidine ribonucleosides salvage II
0.601 2 2 0 (none) 1 of 1 yes
tRNA splicing
0.176 5 1 0 (none) 0 of 0 yes
UTP and CTP de novo biosynthesis
0.694 3 3 0 (none) 0 of 0 yes

Biosynthesis:Amines and Polyamines Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
spermidine biosynthesis I
0.601 2 2 0 (none) 0 of 0 yes

Biosynthesis:Secondary Metabolites Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3)
0.283 5 3 0 (none) 0 of 0 yes
abscisic acid biosynthesis
0.352 5 2 0 (none) 0 of 0 yes
anthocyanin biosynthesis (cyanidin 3-O-glucoside)
0.293 3 1 0 (none) 0 of 0 yes
anthocyanin biosynthesis (pelargonidin 3-O-glucoside)
0.44 2 1 0 (none) 0 of 0 yes
beta-carotene biosynthesis
0.652 2 2 0 (none) 0 of 0 yes
epoxysqualene biosynthesis
0.212 2 1 0 (none) 0 of 0 yes
flavonoid biosynthesis
0.281 7 4 0 (none) 0 of 0 yes
flavonoid biosynthesis (in equisetum)
0.201 10 5 0 (none) 0 of 0 yes
flavonol biosynthesis
0.167 7 3 0 (none) 0 of 0 yes
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)
0.251 7 2 0 (none) 0 of 0 yes
jasmonic acid biosynthesis
0.485 19 11 0 (none) 0 of 0 yes
leucopelargonidin and leucocyanidin biosynthesis
0.546 4 3 0 (none) 0 of 0 yes
lutein biosynthesis
0.587 3 2 0 (none) 0 of 0 yes
myo-inositol biosynthesis
0.566 2 2 0 (none) 1 of 1 yes
phenylpropanoid biosynthesis, initial reactions
0.343 2 2 0 (none) 0 of 0 yes
phytyl diphosphate biosynthesis
0.423 3 3 0 (none) 0 of 0 yes
pinobanksin biosynthesis
0.44 4 2 0 (none) 0 of 0 yes
trans-lycopene biosynthesis II (plants)
0.22 8 2 0 (none) 1 of 1 yes
zeaxanthin, antheraxanthin and violaxanthin interconversion
0.186 4 2 0 (none) 0 of 0 yes

Degradation/Utilization/Assimilation:Alcohols Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
ethanol degradation II
0.162 3 2 0 (none) 1 of 1 yes

Degradation/Utilization/Assimilation:Aldehyde Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
methylglyoxal degradation II
0.44 2 1 0 (none) 1 of 1 yes

Degradation/Utilization/Assimilation:Amines and Polyamines Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
allantoin degradation to ureidoglycolate II (ammonia producing)
0.728 3 3 1 allantoin degradation to glyoxylate II 0 of 0 yes
urea degradation II
0.88 1 1 0 (none) 0 of 0 yes

Degradation/Utilization/Assimilation:Amino Acids Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
glycine cleavage
0.423 3 3 0 (none) 1 of 1 yes
L-alanine degradation III
0.263 1 1 0 (none) 0 of 0 yes
L-aspartate degradation I
0.239 1 1 0 (none) 0 of 0 yes
L-citrulline degradation
0.126 2 1 0 (none) 1 of 1 yes
L-glutamate degradation I
0.263 1 1 0 (none) 0 of 0 yes
L-glutamine degradation I
0.239 1 1 0 (none) 0 of 0 yes
L-leucine degradation I
0.347 6 3 0 (none) 1 of 1 yes
L-lysine degradation XI (mammalian)
0.352 5 2 0 (none) 0 of 0 yes
L-methionine degradation II
0.423 3 1 0 (none) 0 of 0 yes

Degradation/Utilization/Assimilation:Aromatic Compounds Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
urate degradation to allantoin I
0.293 3 1 0 (none) 1 of 1 yes

Degradation/Utilization/Assimilation:Carbohydrates Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
chitin degradation II
0.88 5 5 0 (none) 0 of 0 yes
D-galactose degradation V (Leloir pathway)
0.18 5 3 0 (none) 1 of 1 yes
homogalacturonan degradation
0.88 2 2 0 (none) 0 of 0 yes
melibiose degradation
0.88 1 1 0 (none) 0 of 0 yes
stachyose degradation
0.388 7 5 0 (none) 0 of 0 yes
starch degradation II
0.489 9 5 0 (none) 0 of 0 yes
sucrose degradation II (sucrose synthase)
0.371 5 5 1 sucrose biosynthesis I (from photosynthesis) 1 of 1 yes
sucrose degradation III (sucrose invertase)
0.279 4 4 1 sucrose biosynthesis I (from photosynthesis) 1 of 1 yes

Degradation/Utilization/Assimilation:Cofactors, Prosthetic Groups, Electron Carriers Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
chlorophyll a degradation II
0.22 4 1 0 (none) 0 of 0 yes

Degradation/Utilization/Assimilation:Fatty Acid and Lipids Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
3-phosphoinositide degradation
0.196 9 2 0 (none) 0 of 0 yes
fatty acid beta-oxidation II (peroxisome)
0.121 5 2 0 (none) 1 of 1 yes
fatty acid beta-oxidation III (unsaturated, odd number)
0.423 1 1 0 (none) 0 of 0 yes
fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
0.437 5 3 0 (none) 0 of 0 yes
phospholipases
0.24 5 2 0 (none) 0 of 0 yes

Degradation/Utilization/Assimilation:Hormones Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
cytokinins degradation
0.176 5 1 0 (none) 0 of 0 yes

Degradation/Utilization/Assimilation:Inorganic Nutrients Metabolism

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
L-glutamine biosynthesis I
0.251 1 1 1 ammonia assimilation cycle I 0 of 0 yes
phosphate acquisition
0.88 1 1 0 (none) 0 of 0 yes
selenate reduction
0.22 5 1 0 (none) 0 of 0 yes
seleno-amino acid detoxification and volatilization I
0.212 2 1 0 (none) 0 of 0 yes
sulfate activation for sulfonation
0.566 2 2 0 (none) 0 of 0 yes
urea cycle
0.236 5 4 0 (none) 1 of 1 yes

Degradation/Utilization/Assimilation:Nucleosides and Nucleotides Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
adenosine nucleotides degradation I
0.342 8 3 0 (none) 0 of 0 yes
adenosine nucleotides degradation II
0.344 5 3 0 (none) 1 of 1 yes
pyrimidine ribonucleosides salvage II
0.601 2 2 0 (none) 1 of 1 yes
S-methyl-5'-thioadenosine degradation I
0.652 2 2 0 (none) 1 of 1 yes
thymine degradation
0.293 3 1 0 (none) 0 of 0 yes
uracil degradation I (reductive)
0.293 3 1 0 (none) 0 of 0 yes
UTP and CTP dephosphorylation II
0.389 3 3 0 (none) 2 of 2 yes

Degradation/Utilization/Assimilation:Polymeric Compounds Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
chitin degradation II
0.88 5 5 0 (none) 0 of 0 yes
starch degradation II
0.489 9 5 0 (none) 0 of 0 yes

Degradation/Utilization/Assimilation:Secondary Metabolites Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3)
0.283 5 3 0 (none) 0 of 0 yes
abscisic acid biosynthesis
0.352 5 2 0 (none) 0 of 0 yes
UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)
0.587 3 2 0 (none) 1 of 1 yes

Detoxification:Acid Resistance

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links

Detoxification:Methylglyoxal Detoxification

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
methylglyoxal degradation II
0.44 2 1 0 (none) 1 of 1 yes

Detoxification:Reactive Oxygen Species Degradation

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
superoxide radicals degradation
0.423 2 2 2 reactive oxygen species degradation 0 of 0 yes

Detoxification:Seleno-Amino Acid Detoxification

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
seleno-amino acid detoxification and volatilization I
0.212 2 1 0 (none) 0 of 0 yes

Detoxification

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
farnesylcysteine salvage pathway
0.44 4 1 0 (none) 0 of 0 yes

Generation of Precursor Metabolites and Energy:Acetyl-CoA Biosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
acetyl-CoA biosynthesis III (from citrate)
0.423 1 1 0 (none) 0 of 0 yes

Generation of Precursor Metabolites and Energy:Glycolysis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
glycolysis III (from glucose)
0.185 10 8 4 sucrose biosynthesis I (from photosynthesis) 0 of 0 yes

Generation of Precursor Metabolites and Energy:Other

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
glycerol-3-phosphate shuttle
0.44 2 1 1 superpathway of phosphatidate biosynthesis (yeast) 0 of 0 yes

Generation of Precursor Metabolites and Energy:Pentose Phosphate Pathways

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
pentose phosphate pathway (non-oxidative branch)
0.197 5 4 0 (none) 0 of 0 yes

Generation of Precursor Metabolites and Energy:Photosynthesis

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
C4 photosynthetic carbon assimilation cycle, NAD-ME type
0.163 9 5 0 (none) 0 of 0 yes
C4 photosynthetic carbon assimilation cycle, NADP-ME type
0.194 5 3 0 (none) 0 of 0 yes
C4 photosynthetic carbon assimilation cycle, PEPCK type
0.189 10 6 0 (none) 0 of 0 yes

Generation of Precursor Metabolites and Energy:Respiration

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
2-oxoglutarate decarboxylation to succinyl-CoA
0.356 3 3 0 (none) 1 of 1 yes

Generation of Precursor Metabolites and Energy

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
glyoxylate cycle
0.207 6 5 0 (none) 2 of 2 yes

Macromolecule Modification:Protein Modification

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
mannosyl-glycoprotein N-acetylglucosaminyltransferases
0.251 7 2 0 (none) 0 of 0 yes

Metabolic Clusters

Pathway Pathway Glyph Pathway Score Total Rxns Rxns Present in Manihot esculenta Rxns Present in Other Pwys Other Pwys Key Rxns Present In Taxonomic Range? Links
cytokinins degradation
0.176 5 1 0 (none) 0 of 0 yes
phospholipases
0.24 5 2 0 (none) 0 of 0 yes
pyrimidine deoxyribonucleotides de novo biosynthesis I
0.16 9 5 0 (none) 1 of 1 yes
sporopollenin precursors biosynthesis
0.265 18 4 0 (none) 0 of 0 yes
sterol:steryl ester interconversion (yeast)
0.44 4 2 0 (none) 0 of 0 yes
suberin monomers biosynthesis
0.167 19 6 0 (none) 0 of 0 yes
tRNA charging
0.481 21 12 0 (none) 0 of 0 yes