daTALbase - Database for
TAL Effectors
analysis
Cassava
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TAL effectors
TAL targets in plants (EBEs)
RNA-Seq/microarray
SNPs/indels
My gene lists
Input
Enter a list of TALs:
(RVD sequence, identifiers...)
Filters
Bacteria species (1)
Xanthomonas_axonopodis_pv_manihotis
Origin Countries (2)
Indonesia
Colombia
Strains (3)
Xam_CFBP1851
Xam_CIO151
Xam_UA668
Input
Enter a list of TALs or genes:
Filters
In plant species (1)
manihot_esculenta_Crantz
Maximum rank of prediction
Prediction software:
TALENT
TALgetter
TALvez
Input
Enter a list of genes:
(ex:LOC_Os01g01160)
Filters
Select a comparison of treatments (18)
PRJNA257332 - Mock.50hpi versus Xam668.50hpi
PRJNA257332 - Xam668.8hpi versus Xam668.24hpi
PRJNA257332 - Xam668.8hpi versus Xam668.50hpi
PRJNA257332 - Mock.8hpi versus Mock.24hpi
PRJNA257332 - Mock.8hpi versus Mock.50hpi
PRJNA257332 - Xam668.24hpi versus Xam668.50hpi
PRJNA231851 - ORST4x0dpi versus ORST4x5dpi
PRJNA231851 - ORST4x0dpi versus ORST4x7dpi
PRJNA231851 - ORST4x0dpi versus TALE1Xamx0dpi
PRJNA231851 - ORST4x7dpi versus TALE1Xamx7dpi
PRJNA231851 - TALE1Xamx0dpi versus TALE1Xamx7dpi
PRJNA231851 - TALE1Xamx5dpi versus TALE1Xamx7dpi
PRJNA257332 - Mock.24hpi versus Xam668.24hpi
PRJNA231851 - ORST4x5dpi versus ORST4x7dpi
PRJNA231851 - ORST4x5dpi versus TALE1Xamx5dpi
PRJNA257332 - Mock.24hpi versus Mock.50hpi
PRJNA231851 - TALE1Xamx0dpi versus TALE1Xamx5dpi
PRJNA257332 - Mock.8hpi versus Xam668.8hpi
Input
Select variants dataset:
WGS Bredeson et al (2016)
WGS Ramu et al, 2017 (indels)
Enter a list of genes to search for variants in promoter:
(ex:LOC_Os12g40390)
